Early detection and treatment of diseases that onset after a patient is admitted to a hospital, such as pneumonia, is critical to improving and reducing costs in healthcare. Previous studies (Tepper et al., 2013) showed that change-of-state events in clinical notes could be important cues for phenotype detection. In this paper, we extend the annotation schema proposed in (Klassen et al., 2014) to mark change-of-state events, diagnosis events, coordination, and negation. After we have completed the annotation, we build NLP systems to automatically identify named entities and medical events, which yield an f-score of 94.7% and 91.8%, respectively.
@InProceedings{KLASSEN16.1222,
author = {Prescott Klassen and Fei Xia and Meliha Yetisgen}, title = {Annotating and Detecting Medical Events in Clinical Notes}, booktitle = {Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC 2016)}, year = {2016}, month = {may}, date = {23-28}, location = {Portorož, Slovenia}, editor = {Nicoletta Calzolari (Conference Chair) and Khalid Choukri and Thierry Declerck and Sara Goggi and Marko Grobelnik and Bente Maegaard and Joseph Mariani and Helene Mazo and Asuncion Moreno and Jan Odijk and Stelios Piperidis}, publisher = {European Language Resources Association (ELRA)}, address = {Paris, France}, isbn = {978-2-9517408-9-1}, language = {english} }
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